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 23 Nov 2009 
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Databases on the web - Evolutionary biology
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Database on the web
ACUTS (Ancient Conserved Untranslated Sequences)
Description: An annotated database of conserved untranslated sequences.
Subject areas: Genomics, Genetics, Evolutionary biology
Content: DNA, Computationally generated, Curated

Database on the web
Archaeal Histone Database
Description: Contains general information, phylogenetic analysis and purification methods for Archaeal histones.
Subject areas: Molecular biology, Bioinformatics, Evolutionary biology
Content: Gene family, Curated, Phylogeny, Links to other sources, Synopses, Interaction

Database on the web
ChickVD (Chicken Variation Database)
Description: Hosts high-quality sequence variation data between three domestic breeds of domestic chicken, variation analysis in the context of chicken genes, cDNAs, chicken orthologs of human disease genes, genetic markers, quantitative trait loci (QTLs) etc.
Subject areas: Genomics, Evolutionary biology
Content: cDNA, Disease, Organism, SNP, Gene, Curated, Sequence, Links to other sources

Database on the web
CnidBase (Cnidarian Evolutionary Genomics Database)
Description: Contains information for investigating the evolutionary, developmental and ecological factors that affect gene expression and gene function in cnidarians.
Subject areas: Developmental biology, Evolutionary biology
Content: Gene, Organism, Sequence, Links to other sources, Interaction

Database on the web
COG (Clusters of Orthologous Groups of Proteins)
Description: Contains clusters of ancient conserved genes situated in conserved domains.
Subject areas: Genomics, Evolutionary biology
Content: Gene, Sequence

Database on the web
DED (Database of Evolutionary Distances)
Description: A database of homologous sequence alignments with estimates of evolutionary distances.
Subject areas: Evolutionary biology, Bioinformatics
Content: Organism, Gene, Synopses, Links to other sources, Sequence, Phylogeny

Database on the web
DOGS (Database Of Genome Sizes)
Description: A list of genome sizes from sequenced species as well as predicted genome sizes from partial sequenced genomes.
Subject areas: Bioinformatics, Genomics, Evolutionary biology
Content: DNA, Curated, Sequence

Database on the web
FR2db (Fossil Record 2 Database)
Description: A listing of the fossil record with counts of originations, extinctions, taxon richness, and rates, for families, orders, classes and phyla of organisms.
Subject areas: Evolutionary biology
Content: Organism, Curated, Phylogeny

Database on the web
GenDiS (Genomic Distribution of structural Superfamilies)
Description: Identifies and classifies evolutionary related proteins at the superfamily level and contains 4001 highly resolved domains in 1194 structural superfamilies across protein sequence databases.
Subject areas: Proteomics, Evolutionary biology
Content: Protein, Protein family, Curated, Links to other sources, Phylogeny

Database on the web
GeneTrees
Description: A database of the phylogenetic patterns of gene homology groups within and across species.
Subject areas: Evolutionary biology, Genetics
Content: Phylogeny, Sequence

Database on the web
GToL (Green Tree of Life)
Description: An interactive tree showing the evolutionary relationships of green plants.
Subject areas: Plant biology, Evolutionary biology
Content: Organism, Curated, Phylogeny

Database on the web
HoBacGen (Homologous Bacterial Genes Database)
Description: A database system that contains all the protein sequences of bacteria organized into families. It allows one to select sets of homologous genes from bacterial species and to visualize multiple alignments and phylogenetic trees.
Subject areas: Genomics, Evolutionary biology
Content: Ontology, Gene family, DNA, Curated, Sequence, Phylogeny

Database on the web
HOVERGEN (Homologous Vertebrate Genes Database)
Description: A database of homologous vertebrate genes, multiple alignments and phylogenetic trees.
Subject areas: Evolutionary biology, Genomics
Content: Gene, Sequence, Curated, Phylogeny

Database on the web
HOX Pro (Homeobox Genes DataBase)
Description: Contains information on the structural and functional genomics of hox ensembles.
Subject areas: Biochemistry, Molecular biology, Evolutionary biology
Content: Gene family, Links to other sources, Sequence, Structure

Database on the web
Jap-ants (A Japanese Ants Picture Database)
Description: Database of images of Japanese ants.
Subject areas: Evolutionary biology, Ecology
Content: Organism, Curated, Phylogeny

Database on the web
MADS Domain Transcription Factors
Description: Contains sequence and evolutionary information on MADS box genes.
Subject areas: Bioinformatics, Evolutionary biology
Content: Ontology, Curated, Sequence, Links to other sources, Phylogeny

Database on the web
Mitochondriome
Description: A website integrating mitochondrial data and databases.
Subject areas: Genomics, Evolutionary biology
Content: DNA, Protein, RNA, Curated, Sequence

Database on the web
NCBI Taxonomy
Description: A taxonomy information for list of species together with links to sequence information.
Subject areas: Evolutionary biology, Genetics
Content: Organism, Links to other sources, Curated, Phylogeny

Database on the web
NEWT (New EBI Web Taxonomy)
Description: Contains taxonomy data compiled in the NCBI database and integrated with data specific to the Swiss-Prot protein knowledgebase.
Subject areas: Genetics, Evolutionary biology
Content: Gene, Gene family, Organism, Curated, Computationally generated

Database on the web
PFR (Plant Fossil Record database)
Description: Contains descriptions and spatio-temporal occurrences of both extinct and extant plants.
Subject areas: Plant biology, Evolutionary biology
Content: Organism, Curated, Phylogeny

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